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       <title>Comparison of traditional Phaser run Vs. MR Grid submission</title>
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               <h1 class="title">Comparison of Phaser Vs. Phaser via MR Grid Submission</h1>
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               <div style="display:inline; float:left;">
                   <div id="SubmissionResultsSection" class="comparisonSection">
                       <div id="SubmissionResultsSectionHeader" class="formSectionHeader">Input parameters</div>
                       <div id="SubmissionResultsSectionContent" class="formSectionContent">
                           <p><b>MTZ File:</b> <a href="sampledata/1s3g-sf.mtz">1s3g-sf.mtz</a></p>

<p><b>PDB Files:</b> <a href="sampledata/M1-1AK2.pdb">M1-1AK2.pdb</a>, <a href="sampledata/M1-1AKY.pdb">M1-1AKY.pdb</a>, <a href="sampledata/M1-1ZAK.pdb">M1-1ZAK.pdb</a>, <a href="sampledata/M1-2C9Y.pdb">M1-2C9Y.pdb</a>, <a href="sampledata/M1-3BE4.pdb">M1-3BE4.pdb</a></p>

                           <p><b>Space Groups:</b> P3121</p>
                           <p><b>RSMDs:</b> 0.8, 1.2, 1.6, 2.0, 2.4</p>
                           <p><b>Phaser Script:</b> (<span class="code_variable">red</span> denotes parts of script that change)</p>
                           <div class="comparisonScript">
                               <p class="code_grey">#!/bin/csh
                               <br/>usr/local/phaser << eof
                               <br/>MODE MR_AUTO
                               <br/>HKLIN 1s3g-sf.mtz
                               <br/>LABIN  F=FP SIGF=SIGFP
                               <br/>TITLE MR Grid
                               <br/>SGALTERNATIVE TEST P3121
                               <br/>COMPOSITION PROTEIN MW 23888 NUMBER 1
                               <br/>ENSEMBLE pdb PDBFILE <span class="code_variable">M1-1AK2.pdb</span> RMS <span class="code_variable">0.8</span>
                               <br/>SEARCH ENSEMBLE pdb NUMBER 1
                               <br/>PACK 10
                               <br/>ROOT <span class="code_variable">M1-1AK2.pdb</span>_P3121_<span class="code_variable">0.8</span>_result
                               <br/>eof</p>
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                       <div id="SubmissionResultsSectionHeader" class="formSectionHeader">Runtime comparison (25 jobs)</div>
                       <div id="SubmissionResultsSectionContent" class="formSectionContent">
                       
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                           <h2 class="comparison">Phaser ran serially</h2>
                           <p><b>Machines used (1):</b>
                           <br/>1x iMac Intel core 2 duo (2.16 GHz)</p>

                           <p><b>Note:</b> Phaser is not parallelised and only uses 1 core</p>
                           <p><b>Total Run Time:</b> 05 hrs 08 mins 40 secs</p>
                       </div>
                       
                       <div class="comparisonSubSection">
                            <h2 class="comparison">Phaser ran via MR Grid Submission</h2>
                            <b>Machines used (10):</b>
                            <br/>6x iMac Intel core 2 duo (2.16 GHz)
                            <br/>1x 8 core Mac Pro (3.0 GHz)
                            <br/>1x Macbook Pro Intel core 2 duo (2.33 GHz)
                            <br/>1x iMac PowerPC G5 (1.8 GHz)
                            <br/>1x Mac Mini PowerPC G4 (1.42 GHz)
                            <br/>
                            <br/><b>Total Run Time:</b> 33 mins 34 secs
                            <h2 class="comparison">9.2x Speed-up</h2>
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                       <div id="SubmissionResultsSectionHeader" class="formSectionHeader">MR jobs (25 total)</div>
                       <div id="SubmissionResultsSectionContent" class="formSectionContent">
                           <p><b>Note:</b> MTZ file and SG remain the same for all jobs.</p>
                           
                           <div style="display:inline; float:left;">
                               <p><b class="title">Job 01:</b> <b>PDB:</b> M1-1AK2.pdb - <b>RMSD:</b> 0.8
                               <br/><b>Z Score:</b> 5.4, <b>LLG:</b> -602.0 <b>Run Time:</b> 9 mins 19 secs</p>
                               <p><b class="title">Job 02:</b> <b>PDB:</b> M1-1AK2.pdb - <b>RMSD:</b> 1.2
                               <br/><b>Z Score:</b> 4.6, <b>LLG:</b> -59.0 <b>Run Time:</b> 26 mins 21 secs</p>
                               <p><b class="title">Job 03:</b> <b>PDB:</b> M1-1AK2.pdb - <b>RMSD:</b> 1.6
                               <br/><b>Z Score:</b> 4.2, <b>LLG:</b> 20.0 <b>Run Time:</b> 23 mins 3 secs</p>
                               <p><b class="title">Job 04:</b> <b>PDB:</b> M1-1AK2.pdb - <b>RMSD:</b> 2.0
                               <br/><b>Z Score:</b> 5.7, <b>LLG:</b> 25.0 <b>Run Time:</b> 7 mins 3 secs</p>
                               <p><b class="title">Job 05:</b> <b>PDB:</b> M1-1AK2.pdb - <b>RMSD:</b> 2.4
                               <br/><b>Z Score:</b> 5.2, <b>LLG:</b> 19.0 <b>Run Time:</b> 7 mins 10 secs</p>
                               <p><b class="title">Job 06:</b> <b>PDB:</b> M1-1AKY.pdb - <b>RMSD:</b> 0.8
                               <br/><b>Z Score:</b> 19.1, <b>LLG:</b> 152.0 <b>Run Time:</b> 2 mins 9 secs</p>
                               <p><b class="title">Job 07:</b> <b>PDB:</b> M1-1AKY.pdb - <b>RMSD:</b> 1.2
                               <br/><b>Z Score:</b> 16.2, <b>LLG:</b> 223.0 <b>Run Time:</b> 2 mins 1 sec</p>
                               <p><b class="title">Job 08:</b> <b>PDB:</b> M1-1AKY.pdb - <b>RMSD:</b> 1.6
                               <br/><b>Z Score:</b> 13.1, <b>LLG:</b> 118.0 <b>Run Time:</b> 2 mins 2 secs</p>
                               <p><b class="title">Job 09:</b> <b>PDB:</b> M1-1AKY.pdb - <b>RMSD:</b> 2.0
                               <br/><b>Z Score:</b> 8.5, <b>LLG:</b> 57.0 <b>Run Time:</b> 2 mins 42 secs</p>
                               <p><b class="title">Job 10:</b> <b>PDB:</b> M1-1AKY.pdb - <b>RMSD:</b> 2.4
                               <br/><b>Z Score:</b> 6.3, <b>LLG:</b> 27.0 <b>Run Time:</b> 4 mins 46 secs</p>
                               <p><b class="title">Job 11:</b> <b>PDB:</b> M1-1ZAK.pdb - <b>RMSD:</b> 0.8
                               <br/><b>Z Score:</b> 9.7, <b>LLG:</b> -450.0 <b>Run Time:</b> 2 mins 52 secs</p>
                               <p><b class="title">Job 12:</b> <b>PDB:</b> M1-1ZAK.pdb - <b>RMSD:</b> 1.2
                               <br/><b>Z Score:</b> 10.5, <b>LLG:</b> 38.0 <b>Run Time:</b> 2 mins 21 secs</p>
                               <p><b class="title">Job 13:</b> <b>PDB:</b> M1-1ZAK.pdb - <b>RMSD:</b> 1.6
                               <br/><b>Z Score:</b> 8.6, <b>LLG:</b> 65.0 <b>Run Time:</b> 22 mins 38 secs</p>
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                               <p><b class="title">Job 14:</b> <b>PDB:</b> M1-1ZAK.pdb - <b>RMSD:</b> 2.0
                               <br/><b>Z Score:</b> 5.1, <b>LLG:</b> 31.0 <b>Run Time:</b> 33 mins 5 secs</p>
                               <p><b class="title">Job 15:</b> <b>PDB:</b> M1-1ZAK.pdb - <b>RMSD:</b> 2.4
                               <br/><b>Z Score:</b> 5.5, <b>LLG:</b> 23.0 <b>Run Time:</b> 6 mins 58 secs</p>
                               <p><b class="title">Job 16:</b> <b>PDB:</b> M1-2C9Y.pdb - <b>RMSD:</b> 0.8
                               <br/><b>Z Score:</b> 5.0, <b>LLG:</b> -561.0 <b>Run Time:</b> 17 mins 23 secs</p>
                               <p><b class="title">Job 17:</b> <b>PDB:</b> M1-2C9Y.pdb - <b>RMSD:</b> 1.2
                               <br/><b>Z Score:</b> 4.6, <b>LLG:</b> -66.0 <b>Run Time:</b> 18 mins 36 secs</p>
                               <p><b class="title">Job 18:</b> <b>PDB:</b> M1-2C9Y.pdb - <b>RMSD:</b> 1.6
                               <br/><b>Z Score:</b> 4.8, <b>LLG:</b> 13.0 <b>Run Time:</b> 31 mins 14 secs</p>
                               <p><b class="title">Job 19:</b> <b>PDB:</b> M1-2C9Y.pdb - <b>RMSD:</b> 2.0
                               <br/><b>Z Score:</b> 5.4, <b>LLG:</b> 26.0 <b>Run Time:</b> 33 mins 14 secs</p>
                               <p><b class="title">Job 20:</b> <b>PDB:</b> M1-2C9Y.pdb - <b>RMSD:</b> 2.4
                               <br/><b>Z Score:</b> 4.4, <b>LLG:</b> 18.0 <b>Run Time:</b> 16 mins 18 secs</p>
                               <p><b class="title">Job 21:</b> <b>PDB:</b> M1-3BE4.pdb - <b>RMSD:</b> 0.8
                               <br/><b>Z Score:</b> 12.1, <b>LLG:</b> 23.0 <b>Run Time:</b> 2 mins 51 secs</p>
                               <p><b class="title">Job 22:</b> <b>PDB:</b> M1-3BE4.pdb - <b>RMSD:</b> 1.2
                               <br/><b>Z Score:</b> 12.1, <b>LLG:</b> 169.0 <b>Run Time:</b> 2 mins 59 secs</p>
                               <p><b class="title">Job 23:</b> <b>PDB:</b> M1-3BE4.pdb - <b>RMSD:</b> 1.6
                               <br/><b>Z Score:</b> 12.1, <b>LLG:</b> 103.0 <b>Run Time:</b> 8 mins 15 secs</p>
                               <p><b class="title">Job 24:</b> <b>PDB:</b> M1-3BE4.pdb - <b>RMSD:</b> 2.0
                               <br/><b>Z Score:</b> 6.8, <b>LLG:</b> 53.0 <b>Run Time:</b> 8 mins 28 secs</p>
                               <p><b class="title">Job 25:</b> <b>PDB:</b> M1-3BE4.pdb - <b>RMSD:</b> 2.4
                               <br/><b>Z Score:</b> 5.1, <b>LLG:</b> 27.0 <b>Run Time:</b> 14 mins 53 secs</p>
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